PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g060070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 652aa MW: 73610.9 Da PI: 4.7332 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.2e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ Csa08g060070.1 10 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 103 579**************************9.99**************95347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Csa08g060070.1 104 N-GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 137 9.9******************************98 PP | |||||||
2 | NAM | 101.3 | 1.3e-31 | 144 | 226 | 41 | 128 |
NAM 41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ + k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Csa08g060070.1 144 KADKS----KLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRN-GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 226 33333....4456778*************************************9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-56 | 8 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.949 | 10 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-28 | 12 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-38 | 151 | 249 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-15 | 156 | 226 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.916 | 164 | 249 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MGRDSVTTSL APGFRFHPTD EELVRYYLKR KVCNKPFKFD AISVTDIYKS EPWDLPDKSK 60 LKSRDLEWYF FSMLDKKYSN GSKTNRATEK GYWKTTGKDR EIRNGSRVVG MKKTLVYHKG 120 RAPRGERTNW VMHEYRLSDE DLKKADKSKL KSRDLEWYFF SMLDKKYSNG SKTNRATEKG 180 YWKTTGKDRE IRNGSRVVGM KKTLVYHKGR APRGERTNWV MHEYRLSDED LKKAGVPQEA 240 YVLCRIFQKS GTGPKNGEQY GAPFLEEEWE EDAMTYVPEQ DAFSEGLAVD DDVYVDIDEI 300 DEKSENLVVY DAVPILPNYC HGESSNNVES GNHSDSGNYI QPGNYVVDSG GYFEQPIETF 360 EEDKKPIIRD GSIQPCSLFP EEHIDCGVQD ENAVNLDSSN NNVFVADTCY SDIPIDTNYL 420 PDEPFMDPNN SLPLNDGLYL ETNDLSIAQQ DDFNFEDYLN DFNFDDDGFT LDDPELDALL 480 DQKPAPEELE KEVAEGKEMV EKKERGEGSS SKQDADLTDF DSASKYPFLK KTSHMLGAIP 540 APSSFASQFK SKDAAIRLHS AQSSGSVHVT AGMIRISNMT LAADSSMGWA YDKNGNLNVV 600 LSFGVVQRDD GLNASGSKTG TTETRAMLIF MCLWVLLLSV SFKIGTLVSA R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-42 | 9 | 249 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g060070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099609 | 0.0 | AY099609.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. | |||
GenBank | AY128859 | 0.0 | AY128859.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423583.1 | 0.0 | PREDICTED: NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | D7LXI4 | 0.0 | D7LXI4_ARALL; Uncharacterized protein | ||||
STRING | XP_010423582.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |