PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g058940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 251aa MW: 28665.3 Da PI: 7.6271 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.6 | 2.9e-12 | 26 | 108 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L+ea ++ +l g+l++++W++v++++ + ++ +qCk++++ l+k+yk +k+ + st+++fd+l+ Csa08g058940.1 26 WSEEATATLVEAWGNRYVKLHHGNLRQNDWKDVADAVnsrhGDNARAKTDVQCKNRIDTLKKKYKTEKAKLSP------STWRFFDRLD 108 *************************************86444444567999*****************99986......68*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-23 | 24 | 109 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
METTTTTPQS KSSGSHRPPL GREDWWSEEA TATLVEAWGN RYVKLHHGNL RQNDWKDVAD 60 AVNSRHGDNA RAKTDVQCKN RIDTLKKKYK TEKAKLSPST WRFFDRLDFL IGPVVKKSTR 120 GGGVVKSVVP FVNPNHLNPA GSESSLDDDD DDNESGDWEF VARKQPRVEE VDLSEEGSTC 180 RELASAILRF GEVYERIEGK KQQMMIELEK QRMEVTKEVE LKRLNMLMEM QLEIEKSKQR 240 KRRVGSGMEL * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g058940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423458.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | R0FGL5 | 1e-137 | R0FGL5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423458.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-136 | sequence-specific DNA binding transcription factors |