PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g056300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 272aa MW: 30749.2 Da PI: 6.9698 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88.7 | 1.3e-27 | 48 | 115 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl++ak ++ l+ +++++ Csa08g056300.1 48 GGKDRHSKVFTVRGVRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEAAKNDVDLLPPLQFPPG 115 78***********************************************************9977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-26 | 49 | 117 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.644 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDMRLNPSRE DMIRFKQEVE DRNQPSSLSL SRQRWNNPRI VRVSRTFGGK DRHSKVFTVR 60 GVRDRRIRLS VMTAIQVYDL QERLGLSQPS KVIDWLLEAA KNDVDLLPPL QFPPGFHQVI 120 NPNLSGLGES FPGVFESFDL GGCSNRENLD LEKMKWVKFD QDSNLDHGFD IDHHHNVSNS 180 IQSNKVYFPT TTTTTTSASS SYHYNLGHLQ QYLLDQSGNV TVAFSNTSNL NPPAVETVSS 240 LFPRYPSFIG GGQLQLFSEN SNSSNQTDRV E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g056300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL357612 | 1e-108 | AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project). | |||
GenBank | BT029995 | 1e-108 | BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-108 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423139.1 | 0.0 | PREDICTED: transcription factor TCP17-like | ||||
Swissprot | Q9LEZ9 | 1e-123 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | R0H8V5 | 1e-144 | R0H8V5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423139.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 1e-120 | TCP domain protein 17 |
Publications ? help Back to Top | |||
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