PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g053220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 429aa    MW: 48248 Da    PI: 5.4911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g053220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09246291454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +       ++Ka+ L  Av  I++L
  Csa08g053220.1 246 SHVEAERQRREKLNHRFYALRAVVPNvS------GMDKASLLSDAVSNIQNL 291
                     699***********************55......59************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-2834187IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.67E-16239307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15246307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-10246295No hitNo description
PfamPF000105.9E-7246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDNNLTFSPS LSSSMLSITQ KTQAIVSSSS TDLLQQKLRF LVETSPDQWA YIIFWQKMID  60
DQSDQSYLVW VDGHFCGNKN NKSQENHTTK SIECELMMDG GDLELFYATS FYGEDGSRRK  120
EISDESLVWL TGLDELRFSS YERAKEASFH GVHTFVSAPI HNGTIELGSS DSIKQNWNFI  180
NRVTSMFGSG QTLELTNQTG SYPKPEESDD SETGNQQITS EKIRRTKLET TDVATAKENH  240
PSRGFSHVEA ERQRREKLNH RFYALRAVVP NVSGMDKASL LSDAVSNIQN LKTKINDLET  300
EIKRLKTILT AETDPLDNNS SNRSPSFVDK VNQRPSESNL EVQVKVVGDE AVVRVQTENV  360
NHPTCALMST LMEMDCRVQH ANASRLGQIM VQDVVVLVPD KLRSEDCIRT TLVRNLAKIT  420
KLNLAMYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-18245309771Transcription factor MYC2
5gnj_B4e-18245309771Transcription factor MYC2
5gnj_E4e-18245309771Transcription factor MYC2
5gnj_F4e-18245309771Transcription factor MYC2
5gnj_G4e-18245309771Transcription factor MYC2
5gnj_I4e-18245309771Transcription factor MYC2
5gnj_M4e-18245309771Transcription factor MYC2
5gnj_N4e-18245309771Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g053220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422737.10.0PREDICTED: transcription factor bHLH14-like
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGXP_010422737.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]