PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g053030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 322aa MW: 35775.3 Da PI: 6.1871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g053030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	118	169	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A+++Ik+L+ Csa08g053030.1 118 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 169 79*************************9...89***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.58E-13	116	173	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	116	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-16	116	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.72	117	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-12	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGGLMRFGEL EEQFSQLLDT TTEEKIPFLQ MLQCIDPNFT TAEPFLQSLL QIQTLEPKSC 60 HTHTLDAITI KRDPGQTDDP EKDPRTEDGG AATTTVLKEK RKRKRTRAPK NKDEVENQRM 120 THIAVERNRR RQMNEHLNSL RSLMPPSFLQ RGDQASIVGG AIDFIKELEQ LLQSLEAEKR 180 NDGTNETPKT ASSTSSSSRA CTTNSSVSSV STTSEDGFPA RYGGGETAEV EATVIQNHVS 240 LKVRCKRGKG QILRAIVSIE ELKLAILHLS ISSSFDFVVY SFNLKIEDGC KLGSADEIAT 300 AVHQIFEQIN GEMMWSNLSR T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	129	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g053030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099780	0.0	AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
GenBank	AY128881	0.0	AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010422717.1	0.0	PREDICTED: transcription factor bHLH57-like
Swissprot	Q9M128	1e-175	BH057_ARATH; Transcription factor bHLH57
TrEMBL	R0HBR9	1e-180	R0HBR9_9BRAS; Uncharacterized protein
STRING	XP_010422717.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14696	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	1e-161	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]