PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g052780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 605aa    MW: 70271.3 Da    PI: 6.4876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g052780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.65e-23111273128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     pG rF+Pt+ +l+++yL+ + egk+ +    i e++iy+ ePw L+  ++++++++ w++F++r k++  +kr +r++  g+Wk+ g+  ++++ 
  Csa08g052780.1  11 PGSRFNPTNLQLIDRYLRWRKEGKSSSY---IYEMNIYEKEPWLLQhvRHFRSKRNMWFYFFTRTKAE--SKRMSRVAGGGTWKTNGH-LDIKK- 98 
                     9*******************99999655...9*************95337777888998888887765..57************9998.78888. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g ++g+ + + f      k ekt Wvmhey l
  Csa08g052780.1  99 DGVKIGTMQLISFK----IKKEKTGWVMHEYIL 127
                     9999***9999997....34468********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-267148IPR003441NAC domain
PROSITE profilePS5100529.1939148IPR003441NAC domain
PfamPF023653.5E-1511126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MMVTRRRSQI PGSRFNPTNL QLIDRYLRWR KEGKSSSYIY EMNIYEKEPW LLQHVRHFRS  60
KRNMWFYFFT RTKAESKRMS RVAGGGTWKT NGHLDIKKDG VKIGTMQLIS FKIKKEKTGW  120
VMHEYILDDH QVKQRSHQEV VLCTIKFKPG KDKTLYAYAP RLEPIVIGQP QPQPPRGEEE  180
NQNRNDVHVA AAEDIQYLGA PPPRETQQGI EHHQEFGSYG QLAHQQSHIL GLVEGPDHQH  240
HHHGYGYMAE YYNQPRRQEM DGSHSAHPYD PSQLPTELQE QYILAVQHQQ LRMEQHQRHI  300
LGLVEGSDHQ HQGYGYISEY YNQPRRQEMD GSHTANPYDP SQLPMELQEQ YKLAVQHQQL  360
RMEQHQRHIL GQATHLSSQL PVMMMNQAIE EKQYGQPYHQ NNDLSVIHME TQEQDNMVGN  420
SASQLKHGEQ NNVPLMTMNP TTEPPQPTNN LVHEHYGYGN MDEYLNQFCR QETDPPLSAQ  480
AIGVHHRIGS SGLYSAQHND QNHQNVTSFK EDEYDYNHLM HLFEVVLMET QQQGNEEEDN  540
VSLMTTNQTT KPPQLTREQQ QPCEQAATTR NELTQEMDPE IASLLFGQNI TVEEATLMAT  600
LGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-131114522165NAC domain-containing protein 19
3swm_B7e-131114522165NAC domain-containing protein 19
3swm_C7e-131114522165NAC domain-containing protein 19
3swm_D7e-131114522165NAC domain-containing protein 19
3swp_A7e-131114522165NAC domain-containing protein 19
3swp_B7e-131114522165NAC domain-containing protein 19
3swp_C7e-131114522165NAC domain-containing protein 19
3swp_D7e-131114522165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g052780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010466871.11e-160(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-16NTM1-like 8