PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g050070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 510aa    MW: 57253.1 Da    PI: 7.4932
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g050070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-182176257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    +kR   t+ q+ +Le+++++++yp++e++ +LA+++gLte+qV+ WF+ rR k+k+
  Csa08g050070.1 21 KKRKLKTPIQVMTLENFYNEHKYPTEEMKGKLAEEIGLTEKQVSGWFCHRRLKDKR 76
                    8999**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-20476IPR009057Homeodomain-like
PROSITE profilePS5007116.5841777IPR001356Homeobox domain
SMARTSM003891.1E-181981IPR001356Homeobox domain
SuperFamilySSF466898.55E-171982IPR009057Homeodomain-like
PfamPF000461.7E-152176IPR001356Homeobox domain
CDDcd000861.64E-162177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNSDSGEAPA DGDKASTENS KKRKLKTPIQ VMTLENFYNE HKYPTEEMKG KLAEEIGLTE  60
KQVSGWFCHR RLKDKRSVKE DGTTIGSQDR SSVVIQDRGS GLRQDSCGST KQTDYWNPKP  120
REVESQRLYE GSYMGNADGE DSTSSERSSS LHKNLLSSKD GIRDVESSRD VTRNDVIQHP  180
QVMRSYGYNK PSGYLKVKRE SENVSITAVK RQLGRQYQTD GPPLGIQFDP LPPGAFEPQT  240
NAIVQEPIYV GNQRRPHPPH LLGTRKSFNP GPSYELARKL KMHSPYPDSE EEDDDNIMIG  300
MEPGLRDRKS LGEPRLKSPS PSFYNTVPNH KPFQETIKGS PRELPVTNNK KGRISSKSWA  360
EGSRNNMIAN FHNLPGSNIE TNQTHNYDKK IFNGGHKTGY LTKSSKLLPP SRSRSPDSID  420
RGPSSVMVGK FHGERNQTKT HREKLHSTDE PLVTKQVEDD YLQQDYAQKS SYSEILEREG  480
QINRSDVELP SSLSGDDDET DESSSSSMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g050070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412960.0AJ441296.1 Arabidopsis thaliana mRNA for homeodomain protein 14 (hd-14 gene).
GenBankBT0263720.0BT026372.1 Arabidopsis thaliana At4g03250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422483.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
TrEMBLR0HBG10.0R0HBG1_9BRAS; Uncharacterized protein
STRINGXP_010422483.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.10.0HB-other family protein