PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g049370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 284aa    MW: 31990.5 Da    PI: 4.1831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g049370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-061611991255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  Csa08g049370.1 161 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 199
                     677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-7159202No hitNo description
SuperFamilySSF474595.63E-11159207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0051160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-9163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTEEFEIAGI STGTWWSSPT NTAAVFSRYS LPRSTEISLD VTNFGWQNIE NKINDQNDGF  60
MNMHNSFFEG LFDPNEQFLS DSWPNTTIPN TKSELLESFP LYDNVFLIDS EAESFLDNEI  120
RDHKSEKPDE ELEENSDEYS PRLLKRPRLE TLSPLPSFKV RKEKLGDRIT ALQQLVSPFG  180
KTDTASVLNE AVEYIKFLQV QVTVLSNPEQ NTIGSVQQQQ CSNKKSINTQ EEEECSSRRQ  240
VDLTSRGLCL MPISAAYPVA AAAASAAEMN TSDFWNLPFC VNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g049370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0154461e-156BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084666.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH114-like
SwissprotQ9M0X81e-154BH114_ARATH; Transcription factor bHLH114
TrEMBLR0FKE11e-162R0FKE1_9BRAS; Uncharacterized protein
STRINGBostr.2983s0058.1.p1e-178(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-114bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]