PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g043320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 298aa    MW: 32065.5 Da    PI: 4.5481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g043320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1994143255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdps    r  r++lg+f taeeAa  +++a+ +l+g
  Csa08g043320.1  94 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTFNTAEEAAVVYDNAAIQLRG 143
                     89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-3093151IPR001471AP2/ERF domain
SMARTSM003802.5E-3994157IPR001471AP2/ERF domain
PROSITE profilePS5103223.57894151IPR001471AP2/ERF domain
CDDcd000185.30E-3294150No hitNo description
PfamPF008477.5E-1294143IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2194151IPR016177DNA-binding domain
PRINTSPR003672.5E-1095106IPR001471AP2/ERF domain
PRINTSPR003672.5E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METEKKLKNI VTQPRILRIS VTDPYATDSS SDEDEEQGFQ AKRRRVKKYV NEVVLESVSS  60
DDDKTKKKRK RTVSTASPAV AVTPAVAVTP AARKFRGVRQ RPWGKWAAEI RDPSRRVRVW  120
LGTFNTAEEA AVVYDNAAIQ LRGPDALLNF SPPPPEEAST VAEETSGSIS GDGGECLDSP  180
VSVLRSPFSG ESTAVKKEFS GVSATVEVKD EPLSTLSGTF TDFSESLFSN DDGFGFPTPM  240
TDSYGGDLFG GDLFADMSFG FGFGSGSGYG SGFSSWHVED HFQDIGDLFG SDPLLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2193150159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14145KRRRV
26671KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g043320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498761e-60AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBankAL1615311e-60AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY5608491e-60AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBankBT0251761e-60BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBankCP0026871e-60CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF2P31e-60AF080120.1 Arabidopsis thaliana BAC F2P3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422056.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotO825031e-110CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLR0FFZ11e-121R0FFZ1_9BRAS; Uncharacterized protein
STRINGXP_010422056.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-100cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]