PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g015450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 341aa    MW: 38359.4 Da    PI: 4.9944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g015450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-49221472128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGf+F+Ptd el+++yLk+k++g + ++ evi++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s 
  Csa08g015450.1  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPDAEIYNFEPWDLPdKSIVKSDNEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS- 114
                     69************************999.99***************778888999**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++e++g+k+tLvf+ grapkge+tdW+mhey +
  Csa08g015450.1 115 GSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCM 147
                     9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5411163IPR003441NAC domain
PROSITE profilePS5100551.78921164IPR003441NAC domain
PfamPF023657.8E-2523146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
METEAFGVSK ETAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPDAEIYN  60
FEPWDLPDKS IVKSDNEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSGSEVIG  120
TKRTLVFHIG RAPKGERTDW IMHEYCMKGV SLDDAMVVCR VRRNKEYHSG TSQKTPQPNL  180
AAEKHMTLQN GATSSESPSD WDNLVDFYLA GESGDKLLAE MAESSENLQV HNDEDFFADI  240
LRDEIINLDE AVKTGNTSNE VPTLESASME IRVLPLPNMI DKQMSSLLEE RPSQKKKGQD  300
ATESLSSCFV GLYSIKSVNR ARWDVIICVV ALIAMLFYLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4071652169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g015450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421014.10.0PREDICTED: NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLR0HBJ40.0R0HBJ4_9BRAS; Uncharacterized protein
STRINGXP_010421014.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]