PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g012210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 227aa MW: 25192.9 Da PI: 5.0686 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.5 | 6e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++de+v +i+ +P l+ska elf+ +l ++ + + +t+ ++++v ++fdfl d+v + Csa08g012210.1 6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTISSFHLKQCVHAFNVFDFLRDTVGK 86 789**************************************************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-25 | 2 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.52E-18 | 4 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-17 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDITLSRGAK 60 TISSFHLKQC VHAFNVFDFL RDTVGKVPDL CGSDAEDQSA SKRRKLVDES NCNDEDMKSA 120 QLYEVKHSGS DSGRQGKGRG RGGGKTGNGL SLTFEEDGSP ESSRTPSPEN RDTSWKKVAS 180 QNNHSKLEES PEWPSLGMNE MKMDPDQQQQ QASASDEEDY DEESIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-24 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g012210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454229.1 | 1e-128 | PREDICTED: dr1-associated corepressor-like isoform X1 | ||||
TrEMBL | F4K162 | 1e-103 | F4K162_ARATH; Histone superfamily protein | ||||
STRING | XP_010454229.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13968 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 2e-94 | NF-YC family protein |