PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g010450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 161aa MW: 18740.2 Da PI: 8.1834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.2 | 1.1e-25 | 17 | 141 | 3 | 126 |
NAM 3 pGfrFhPtdeelvveyLkk.kvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 +GfrFhPt++el+ + L + kv+++ +++ e +++d+y ePw+L ++ + e +ewy+ ++ ++ +g+rk + t +g+Wka gk + Csa08g010450.1 17 VGFRFHPTEQELIRYCLGRnKVAKTWNKVLELQDKTDLYAKEPWRLThTE--TdffEPNEWYYLVTLAQV--SGSRKVKgETCEGRWKALGKLSD 107 7************99996615666668888888889**********8322..2245778****9999876..46777777999************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmhey 126 vlsk k+e++g k++L fy + +++++ W+m ey Csa08g010450.1 108 VLSKdKREVIGKKRILSFYVK--GESNSSGWIMTEY 141 ***977788**********43..33458*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-26 | 13 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.969 | 15 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSMVEKYNEN EQQEEFVGFR FHPTEQELIR YCLGRNKVAK TWNKVLELQD KTDLYAKEPW 60 RLTHTETDFF EPNEWYYLVT LAQVSGSRKV KGETCEGRWK ALGKLSDVLS KDKREVIGKK 120 RILSFYVKGE SNSSGWIMTE YYPLDGGSFQ NQVLSHLKGP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g010450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019083859.1 | 1e-117 | PREDICTED: NAC domain-containing protein 30-like | ||||
TrEMBL | R0HBL0 | 1e-76 | R0HBL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010420538.1 | 1e-116 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 8e-40 | NAC domain containing protein 88 |