PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g009420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 507aa MW: 58277.9 Da PI: 5.3733

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g009420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2.1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v Csa08g009420.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIISEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLv+y+grap+g +t Wvmheyrl Csa08g009420.1 100 C-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 .8899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.403	6	157	IPR003441	NAC domain
Pfam	PF02365	3.6E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSC RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP IAFGMQDSYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTAS 180 NLSGNSSFDV CSDLEISSNT HHHQGLPYSN STDTQPRFGN ANSIGVHDDW SQFLSQDMPS 240 SFSGYGPYTT QSKLLQVNTA LECEMLQHRM SLPPLRVENS PVQAIDFSNR LMNQNSGQSG 300 FDNFTFAPSN SNQFYNNNNV DDHLRNIGNL DEQLLDAGNS TWMRMSNENL NQSFIEEEAI 360 LPSFERNDQD LECYGGSRTN TINNIEIDDF FSFENDVEDN DNSNTTLNSS GVEFIEEEET 420 IVDHKMLIST PQTTEILYYQ VVPSQILKIH ISPRVQRSEE RAAVVLLMEE DKKDSWFQKA 480 ENVAKMRLKQ ISLVAKRYYK SLTIIF*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSC RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP IAFGMQDSYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTAS  180
NLSGNSSFDV CSDLEISSNT HHHQGLPYSN STDTQPRFGN ANSIGVHDDW SQFLSQDMPS  240
SFSGYGPYTT QSKLLQVNTA LECEMLQHRM SLPPLRVENS PVQAIDFSNR LMNQNSGQSG  300
FDNFTFAPSN SNQFYNNNNV DDHLRNIGNL DEQLLDAGNS TWMRMSNENL NQSFIEEEAI  360
LPSFERNDQD LECYGGSRTN TINNIEIDDF FSFENDVEDN DNSNTTLNSS GVEFIEEEET  420
IVDHKMLIST PQTTEILYYQ VVPSQILKIH ISPRVQRSEE RAAVVLLMEE DKKDSWFQKA  480
ENVAKMRLKQ ISLVAKRYYK SLTIIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-55	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g009420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420434.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	R0FKW5	0.0	R0FKW5_9BRAS; Uncharacterized protein
STRING	XP_010420434.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]