PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g006870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 171aa MW: 19100.4 Da PI: 4.6825 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.5e-16 | 44 | 130 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ff+v+++++ +s +++p ++ e+ + + +kt +l g+ W+v + +g++++++GW +Fv + +Lk+g+f++F +dg ++ v+ Csa08g006870.1 44 FFSVFLSHY--SSESFMIPTSYYEHL--PRRLPKTAILIGNGGKIWKVAT--KSIRGQVYFEQGWPSFVADTELKDGEFLTFVFDGYNRY--EVS 130 677774444..44458*******554..456899****************..99999*************************98874433..555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-20 | 41 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.69E-15 | 42 | 132 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 42 | 135 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 42 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.1E-16 | 44 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-13 | 44 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
LFLNFNLSTS FILRVEKRTN PLDQNSSCLV PTSSMASGDV LPRFFSVFLS HYSSESFMIP 60 TSYYEHLPRR LPKTAILIGN GGKIWKVATK SIRGQVYFEQ GWPSFVADTE LKDGEFLTFV 120 FDGYNRYEVS IYGHGGCKEI RAVVEVEDIS DDESESDNNS GESLVSVTQV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 4e-16 | 34 | 137 | 2 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g006870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420133.1 | 4e-97 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
Swissprot | Q1PES7 | 1e-65 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
TrEMBL | R0H1D4 | 3e-80 | R0H1D4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010420133.1 | 1e-96 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.2 | 9e-60 | B3 family protein |
Publications ? help Back to Top | |||
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