PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G06160.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 374aa    MW: 42661.2 Da    PI: 6.5797
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G06160.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.17e-1869156196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ff+v+   ++ +s  +v+p+++   + ++ + +kt +l  + gr W+v +  + k++++++++GW +Fv +n+Lkeg+f++F +dg+++    v++
  AT3G06160.2  69 FFTVF--LSHCSSESMVIPRSYY--NLLPRPLPKTAILIGTGGRFWKVAM--TSKQEQVYFEQGWGNFVADNQLKEGEFLTFVFDGHKSY--EVSI 156
                  55666..55566667*******9..55677899*****************..99*9***************************9986655..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2166162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1867159IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.77567160IPR003340B3 DNA binding domain
CDDcd100171.61E-1667157No hitNo description
PfamPF023627.7E-1569156IPR003340B3 DNA binding domain
SMARTSM010196.2E-2069160IPR003340B3 DNA binding domain
SMARTSM010190.46277365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MWATKSRRCA VKKQCCFLSL VVHRARTEKN RIQSLEIFFL KIKENRLDQI SLPLVHTSSM  60
ASGDVLPRFF TVFLSHCSSE SMVIPRSYYN LLPRPLPKTA ILIGTGGRFW KVAMTSKQEQ  120
VYFEQGWGNF VADNQLKEGE FLTFVFDGHK SYEVSIYGRG DCKETRAVIQ VEEISDDTED  180
DNVSLHSPSN VSLDSLSNDS HHSTSNVSLR SLSNDSLHGD AEIESDSEYS PENLPSASIS  240
VESVEVVNPT TSRQRSYKRK TIENPHLYLD DPNNVCFETC LKLRKFELLV HAQLVKDYGL  300
IFSDNVDYID GYGKLTAKTT KWADQRVCIN KWQKICERNQ FTENDSILCE ILRNEDKVVY  360
AIKIHIFRDA AAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-19591622104At1g16640
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256418_at0.0
Expression AtlasAT3G06160-
AtGenExpressAT3G06160-
ATTED-IIAT3G06160-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G06160.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G06160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189823.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9M8K20.0REM21_ARATH; B3 domain-containing protein REM21
TrEMBLF4J9Q00.0F4J9Q0_ARATH; AP2/B3-like transcriptional factor family protein
STRINGAT3G06160.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Publications ? help Back to Top
  1. Lee J, et al.
    Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.
    Plant Cell, 2007. 19(3): p. 731-49
    [PMID:17337630]