PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g006010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 331aa    MW: 37470.3 Da    PI: 9.4096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g006010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.9e-1837854128
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +ek+ yfF+k+++ +++++r +    +gyWk  gk++++++  g +vg+++tL+fy  ++++++ +kt+W m ey l
  Csa08g006010.1   3 KEKQRYFFCKKKEVSSNERRIKILSGDGYWKPIGKERPIFA-CGGTVGIRRTLAFYeiNKSSSDYNKTKWNMTEYCL 78 
                     57899**********9999999999****************.9999**********5445666678*********87 PP
2NAM96.63.7e-301442646128
             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                     +FhPt++el+ +yL +k+ +++l+  ++i+ +d+++++P ++p   +++ek+ yfF+k+++ +++++r +    +gyWk  gk++++++  g +v
  Csa08g006010.1 144 EFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFYSHPLTFPG--DQKEKQRYFFCKKKEVSSNERRIKILSGDGYWKPIGKERPIFA-CGGTV 234
                     6**********************99.88***************4..4578899**********9999999999****************.9999* PP

             NAM 101 glkktLvfy..kgrapkgektdWvmheyrl 128
                     g+++tL+fy  ++++++ +kt+W m ey l
  Csa08g006010.1 235 GIRRTLAFYeiNKSSSDYNKTKWNMTEYCL 264
                     *********5445666678*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.963198IPR003441NAC domain
SuperFamilySSF1019419.68E-19397IPR003441NAC domain
PfamPF023651.1E-8778IPR003441NAC domain
PROSITE profilePS5100532.452139284IPR003441NAC domain
SuperFamilySSF1019411.7E-34144283IPR003441NAC domain
PfamPF023657.9E-17144264IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
DQKEKQRYFF CKKKEVSSNE RRIKILSGDG YWKPIGKERP IFACGGTVGI RRTLAFYEIN  60
KSSSDYNKTK WNMTEYCLAG FASAKVFGEW AVYNVYERKG SKARKQRKSR DIGDEDLSCS  120
INFTVGSDHE TGPPPPSPPT SADEFHPTEQ ELILHYLLPK AFASPLPSSI IPVFDLFYSH  180
PLTFPGDQKE KQRYFFCKKK EVSSNERRIK ILSGDGYWKP IGKERPIFAC GGTVGIRRTL  240
AFYEINKSSS DYNKTKWNMT EYCLAGFASA KVFGEWAVYN VYERKGSKAR KQRKSRDIGD  300
EDLSCSINFT VGSDHETGPP PPSPPTSADE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-1514526421140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g006010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420021.11e-128PREDICTED: NAC domain-containing protein 83-like
RefseqXP_010420022.11e-128PREDICTED: NAC domain-containing protein 83-like
TrEMBLD7M5Z01e-109D7M5Z0_ARALL; ANAC084
STRINGXP_010420021.11e-127(Camelina sativa)
STRINGXP_010420022.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-112NAC domain containing protein 84