PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g005060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 301aa MW: 34218.7 Da PI: 9.8462

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g005060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.8e-51	56	180	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+e+d+++++PwdLp + +ke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++ Csa08g005060.1 56 LPPGFRFHPTDEELVVQYLKKKVSSSPLPA-SIIPEFDVCRADPWDLPGN---LNKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTS 146 79**************************.89***********54...46799***************************999988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfykg+ p+g++tdW+mheyrl Csa08g005060.1 147 rGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 180 57777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-60	51	202	IPR003441	NAC domain
PROSITE profile	PS51005	58.378	56	202	IPR003441	NAC domain
Pfam	PF02365	3.3E-27	57	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
SYRLLPYKNH TFLVSLFLPR STLFLLLSSF FILCFSFSLF GTMDNVKLVK NGVLRLPPGF 60 RFHPTDEELV VQYLKKKVSS SPLPASIIPE FDVCRADPWD LPGNLNKERY FFSTREAKYP 120 NGNRSNRATG SGYWKATGID KRVVTSRGNQ IVGLKKTLVF YKGKPPHGSR TDWIMHEYRL 180 SSSPPSCMGP TQNWVLCRIF LKKRAGNKND DDDGDSRNLR YNNNNTNDQI DIITRTEQTD 240 DKTKPIFFDF MRKERTTDLN LMPSSPSSDH ASSGVTTEIF SSSSSSDEET SSCNSFRRNL 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	54	208	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	54	208	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	54	208	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	54	208	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	54	208	18	174	NAC domain-containing protein 19
3swm_B	2e-50	54	208	18	174	NAC domain-containing protein 19
3swm_C	2e-50	54	208	18	174	NAC domain-containing protein 19
3swm_D	2e-50	54	208	18	174	NAC domain-containing protein 19
3swp_A	2e-50	54	208	18	174	NAC domain-containing protein 19
3swp_B	2e-50	54	208	18	174	NAC domain-containing protein 19
3swp_C	2e-50	54	208	18	174	NAC domain-containing protein 19
3swp_D	2e-50	54	208	18	174	NAC domain-containing protein 19
4dul_A	2e-50	54	208	15	171	NAC domain-containing protein 19
4dul_B	2e-50	54	208	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g005060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF385734	0.0	AF385734.1 Arabidopsis thaliana AT5g13180/T19L5_140 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010419883.1	0.0	PREDICTED: NAC domain-containing protein 83
Swissprot	Q9FY93	1e-152	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	R0HAM4	1e-165	R0HAM4_9BRAS; Uncharacterized protein
STRING	XP_010419883.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-137	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]