PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g002290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 186aa    MW: 20980.8 Da    PI: 6.9508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g002290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18655255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aaka+++a++ ++g
  Csa08g002290.1  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAAKAYDQAALLMNG 55
                    89****999.**********8.....334**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-32564IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-19664IPR016177DNA-binding domain
CDDcd000187.66E-23665No hitNo description
PfamPF008471.5E-11655IPR001471AP2/ERF domain
PROSITE profilePS5103221.997663IPR001471AP2/ERF domain
SMARTSM003801.7E-38669IPR001471AP2/ERF domain
PRINTSPR003674.7E-10718IPR001471AP2/ERF domain
PRINTSPR003674.7E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAAKAYDQAA LLMNGQNAKT  60
NFPVVKSEEG SDHVKDVNSQ LMSPKSLSEL LNAKLRKSCK DLTPSLTCLR LDTDSSHLGV  120
WQKRAGSKTS PTWVMRLELG NIANESSVDL GLKKQNVEKQ EEEEEAISDE DQLAMEMIEE  180
LLNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16464364ATERF1
3gcc_A2e-16464364ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g002290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608650.0AY560865.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419671.11e-134PREDICTED: ethylene-responsive transcription factor SHINE 2
SwissprotQ9LFN71e-112SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBLD7M3M81e-115D7M3M8_ARALL; Predicted protein
STRINGXP_010419670.11e-134(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-111ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Liu Y, et al.
    Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco.
    Sci Rep, 2017. 7(1): p. 42
    [PMID:28246387]
  3. Kumar V, et al.
    A part of the upstream promoter region of SHN2 gene directs trichome specific expression in Arabidopsis thaliana and heterologous plants.
    Plant Sci., 2017. 264: p. 138-148
    [PMID:28969794]