PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g001280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 217aa    MW: 23073.7 Da    PI: 4.8674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g001280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38111121101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++Cv+apyf +e+ +++fa+vhk+FGasn +kll  +pe++r da+ +l yeA ar+rdPvyG+vg+i++lq+q+++l+ael
  Csa08g001280.1  11 PCGACKFLRRKCLSECVFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPESRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVMNLQAEL 105
                     7*********************998879******************************************************************* PP

          DUF260  95 allkeel 101
                     a ++++l
  Csa08g001280.1 106 ADVQTQL 112
                     *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.83910112IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3711109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSGSTTGGGG PCGACKFLRR KCLSECVFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PESRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELADVQT QLSSLQGLGQ  120
GNPQNNSATT EAASSFNAPL IASVVDNKSN TVSSSSYSSS HINCMQRQEQ KEESRESVDL  180
STLLGLEDPA EEDGDLNALA REFVSKYLTG GQSSPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4141124111LOB family transfactor Ramosa2.1
5ly0_B6e-4141124111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g001280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738551e-133AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419557.11e-159PREDICTED: LOB domain-containing protein 31-like
SwissprotO813221e-110LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-123R0FHZ7_9BRAS; Uncharacterized protein
STRINGXP_010419557.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-85LOB domain-containing protein 31