PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g064290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29405.6 Da PI: 8.7021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 2e-14 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ s f Lr+llP ++K s ++ +Av+YIk+Lq Csa07g064290.1 74 KKMKHRDIERQRRQEVSSLFKSLRSLLPFqY---IQGKRSTSDHIFQAVKYIKDLQ 126 6899*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.74E-16 | 70 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.29E-14 | 71 | 130 | No hit | No description |
PROSITE profile | PS50888 | 14.583 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 74 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-12 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-5 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MDFVPSMFML DSTYEDGLLF SDSFLLSSFV SNQNHDVCDQ IANKIGGSKK KRSLCDTYGV 60 SEADKNDDDD RESKKMKHRD IERQRRQEVS SLFKSLRSLL PFQYIQGKRS TSDHIFQAVK 120 YIKDLQNKNK ELNEKRNRIK KSIPGTNTTV PSTEECTSSL SSSTTSTFSL GCSCVGDKHF 180 TVMVTPCLVG VEIIISCCLG RNKSCLSSVL QILAQEQRLG IVSCLSTRLQ QRFMHTIVSQ 240 VEDSKQINTL KLRDKIVNMM * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g064290.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493516 | 0.0 | AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975. | |||
GenBank | AK228036 | 0.0 | AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04. | |||
GenBank | BT006408 | 0.0 | BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010418297.1 | 0.0 | PREDICTED: transcription factor bHLH125 | ||||
Swissprot | Q9LQ08 | 1e-135 | BH125_ARATH; Transcription factor bHLH125 | ||||
TrEMBL | R0GI84 | 1e-138 | R0GI84_9BRAS; Uncharacterized protein | ||||
STRING | XP_010418297.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62975.1 | 1e-109 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|