PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g061600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 490aa    MW: 55201.4 Da    PI: 9.6133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g061600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.99.3e-111813010128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                     +de ++ ++Lk+ + + +   + + +++d+++ +P+     +  +  e+  f + + ++++ gk      +sg W+  g+dk ++s+ +g+  g 
  Csa07g061600.1  18 EDEVIILRFLKRMIVNGDSWPKLFTQDADVFNKNPNVE---F--N-AEIpIFVVVKPRTESCGKTDG--CSSGCWRIIGRDKLIKSEeTGKILGF 104
                     58889999999998887744435689999999999632...2..2.344367777777666665444..469*************98778889** PP

             NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                     kk+L f  + +p   k +Wvm+eyrl
  Csa07g061600.1 105 KKILKFCLKMQPMEYKRSWVMEEYRL 130
                     ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.9459148IPR003441NAC domain
PfamPF023653.1E-718130IPR003441NAC domain
SuperFamilySSF1019412.62E-2318147IPR003441NAC domain
Gene3DG3DSA:3.50.70.103.1E-66255443IPR016088Chalcone isomerase, 3-layer sandwich
SuperFamilySSF546261.7E-75256466IPR016087Chalcone isomerase
PfamPF024311.2E-98262464IPR016087Chalcone isomerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009813Biological Processflavonoid biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0045430Molecular Functionchalcone isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEDESAPDYN QIAMLNAEDE VIILRFLKRM IVNGDSWPKL FTQDADVFNK NPNVEFNAEI  60
PIFVVVKPRT ESCGKTDGCS SGCWRIIGRD KLIKSEETGK ILGFKKILKF CLKMQPMEYK  120
RSWVMEEYRL TNNLNRKQDH VICKIRFLFR TEISFLLAKH FSYLSTIPEN LLLPSYGYYS  180
DTQEEDESYL LTISDSDGNV WPSYVTNNVY RLHPLTLLKP VILLSLINYQ QNFKVIIIKP  240
IQLAMSLSSS LLPLPSVTQL QIDSVTFAPA ISSPASHNPL FLGGAGVRGL DMHGKFVIFT  300
VIGLYLEANA VPSLSVKWKG KTRKELTESV PFFRDIVTGE FEKFIKVTMK RPLTGKEYSM  360
KVAKNCVMIW KSLGIYTQSE AKALQRFLKI FKDQTFPPGA SILFALSPKG YLTIAFSKDD  420
TIPKAGQAVV KNKLLAEAVL ESIIGKNGVS PATRLSLAER LAQLMNHNKV KEEAKDLSLG  480
DKLAKENNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4doi_A1e-12625348712246Chalcone--flavonone isomerase 1
4doi_B1e-12625348712246Chalcone--flavonone isomerase 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017511e-140HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419421.11e-174PREDICTED: chalcone--flavonone isomerase-like
TrEMBLI0J3G71e-152I0J3G7_ARAHH; Chalcone-flavonone isomerase family protein
STRINGXP_010419421.11e-174(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-111NAC family protein