PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g061560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 21682.3 Da PI: 9.9536 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.8 | 1.2e-11 | 12 | 146 | 11 | 128 |
NAM 11 deelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 ++e+v+ yLk + + + +++++ d+y +P++L +++ + yfF++r+ ++ ++ +sg W+ g+dk ++s+ + Csa07g061560.1 12 EDEIVTTYLKMMMMMIDnngnvWP-RHFLRSQDVYCKNPSTLF-DTQNpwiLYDGRYFFVNRSANS---GKTDGCDESGCWRVMGRDKLIKSEkT 101 689******998766553343222.2469999**********5.222212233467****998754...46777789**************9866 PP NAM 97 gelvglkktLvfy.............kgrapkgektdWvmheyrl 128 g+ g kk+ f k++++ k Wvm+eyrl Csa07g061560.1 102 GKILGFKKVYKFCekekpksmfkfweKEKRRVRDKRIWVMEEYRL 146 6677888888888544444444444323444445999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.551 | 2 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-10 | 12 | 146 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-23 | 12 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MMKSSRHHQS IEDEIVTTYL KMMMMMIDNN GNVWPRHFLR SQDVYCKNPS TLFDTQNPWI 60 LYDGRYFFVN RSANSGKTDG CDESGCWRVM GRDKLIKSEK TGKILGFKKV YKFCEKEKPK 120 SMFKFWEKEK RRVRDKRIWV MEEYRLASQC KQGYVICKIR FLYPNTLDFM LCNHIRGSYI 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g061560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417966.1 | 1e-134 | PREDICTED: uncharacterized protein LOC104703624 | ||||
TrEMBL | R0I8R2 | 7e-92 | R0I8R2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010417966.1 | 1e-133 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16194 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60240.1 | 1e-86 | NAC family protein |