PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 21318.9 Da PI: 10.3288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31 | 7.5e-10 | 11 | 141 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 +e +v +yLk +++ ++ +++++ d+y +Pw+L ++ + yfF++r+ ++ + + g W+ g+d+ ++s +g+ glkk AT1G60240.1 11 EEAIVANYLKMMIDNVNVWPRHFLRSEDVYCKNPWTLFV-TRDpiiLHFGRYFFVNRSVNSG---LTD-GCEYGCWRIIGRDRVIKSVtTGKILGLKK 103 57899************877788**************62.11111133477****9987653...333.3578************9986677778888 PP NAM 105 tLvfy..............kgrapkgektdWvmheyrl 128 + f k++++ + W m+eyr+ AT1G60240.1 104 VYKFCetdrkpksvfkfleKEKRRVRDRRIWAMEEYRF 141 888875555555444444323444446889******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.181 | 1 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-7 | 11 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.45E-24 | 11 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MMKSRREQSI EEAIVANYLK MMIDNVNVWP RHFLRSEDVY CKNPWTLFVT RDPIILHFGR 60 YFFVNRSVNS GLTDGCEYGC WRIIGRDRVI KSVTTGKILG LKKVYKFCET DRKPKSVFKF 120 LEKEKRRVRD RRIWAMEEYR FASTWKQDYV ICKIRRLYPQ PFDYMLAQHI RGYYK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145336893 | 0.0 | ||||
Genevisible | 264269_at | 0.0 | ||||
Expression Atlas | AT1G60240 | - | ||||
AtGenExpress | AT1G60240 | - | ||||
ATTED-II | AT1G60240 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT025739 | 0.0 | BT025739.1 Arabidopsis thaliana At1g60240 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176230.2 | 1e-129 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | Q1ECJ5 | 1e-127 | Q1ECJ5_ARATH; At1g60240 | ||||
STRING | AT1G60240.1 | 1e-128 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16194 | 11 | 14 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60240.1 |
Entrez Gene | 842319 |
iHOP | AT1G60240 |
wikigenes | AT1G60240 |
Publications ? help Back to Top | |||
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