PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g060590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family EIL
Protein Properties Length: 400aa    MW: 45817.9 Da    PI: 4.8052
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g060590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3159.53.9e-49501452100
                     XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWk 96 
                     el+krmw+d+m+lkrlke++ + +  ke+ ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWk
  Csa07g060590.1  50 ELEKRMWRDKMRLKRLKEQQSK-C--KEEGVDGSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWK 141
                     9******************997.5..66669**************************************************************** PP

                     XXXX CS
            EIN3  97 ekve 100
                     +kv+
  Csa07g060590.1 142 DKVS 145
                     **97 PP
2EIN333.11.1e-10147256273354
                     XXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX...........................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XX CS
            EIN3 273 kvtlsceqkedve.gkkeskikhvqavktta...........................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgset 339
                     ++ +++ +++dve  +ke+   +v+++k +                            ++++ rkrk++++ + +++++ + +tc++ q+++ ++
  Csa07g060590.1 147 SLLINDCSEYDVEgFEKEQPSFDVEERKPEIvmmnpptsfgiakmqqfpikeevatigNLEFSRKRKQNNDMNVMIMDRPAGYTCENGQCPHGKM 241
                     56788889*****87777777899999987799************************************************************** PP

                     XXXXXXXXXXXXXXX CS
            EIN3 340 elifadknsisqney 354
                     +l+f+d++s++++++
  Csa07g060590.1 242 NLGFQDRSSRDNHQM 256
                     *************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.0E-4450145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMMFNEMGMY GNMDFFPSST PLDVCPLPQA EQEPVVEDVD YTDDEMDVGE LEKRMWRDKM  60
RLKRLKEQQS KCKEEGVDGS KQRQSQEQAR RKKMSRAQDG ILKYMLKMME VCKAQGFVYG  120
IIPEKGKPVT GASDNLREWW KDKVSGSLLI NDCSEYDVEG FEKEQPSFDV EERKPEIVMM  180
NPPTSFGIAK MQQFPIKEEV ATIGNLEFSR KRKQNNDMNV MIMDRPAGYT CENGQCPHGK  240
MNLGFQDRSS RDNHQMVCPY RDNGVAYGAS KFRVGEMRPQ QSIDLSGFGV PENGQKMITE  300
LMAMYDRNVQ SSQTPPPLMV NQSMTLDAKP AQNQQLSFNS GNQMFMQQGT NSMVNNRFQM  360
VFDSTPFDMA AFDYRDDWQT GAMEGMGKQQ QQQDASIWF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g060590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0056230.0AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankAF0042130.0AF004213.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) mRNA, complete cds.
GenBankAY0651910.0AY065191.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050; T20P8.10) mRNA, complete cds.
GenBankBT0033440.0BT003344.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417849.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein isoform X1
RefseqXP_010417850.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein isoform X2
SwissprotQ9SLH01e-148EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLD7LFJ41e-152D7LFJ4_ARALL; Uncharacterized protein
STRINGXP_010417849.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-150ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]