PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g054930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 528aa MW: 59563.7 Da PI: 9.0072

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g054930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66	3.7e-21	20	62	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k Csa07g054930.1 20 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 62 8999***********************************9876 PP
2	SRF-TF	58.4	9e-19	192	227	10	45
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 qvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k Csa07g054930.1 192 QVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 227 9*******************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-30	10	69	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.591	10	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.15E-32	11	79	No hit	No description
SuperFamily	SSF55455	3.14E-27	11	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-24	19	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-16	47	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-17	151	234	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.731	192	235	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-21	192	231	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-21	192	255	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MMMSKKKETI GRQKIPMVKI KKESHRQVTF SKRRAGLFKK ASELCTLCGA EIGIIVFSPA 60 KKPFSFGHPS VESLLDRYLS RNNISLAQTQ QPQGNSAAGC ELNMQLTQIL SEVEDEKKKG 120 QAMEEIRKAS VRRSVINWWE KPVEEMNMFQ LQEMKHALEE LRKTVVTNMA SFSEVKEDVF 180 GFLDNKVTAP PQVTFSKRRA GLFKKASELC TLCGAEIGII VFSPAKKPFS FGHPSVESLL 240 DRYLSRNNIS LAQTQQPQGN SAAGCELNMQ LTQILSEVED EKKKGQAMEE IRKASVRRSV 300 INWWEKPVEE MNMFQLQEMK HALEELRKTV VTNMASFSEV KEDVFGFLDN KVTAPPYMNM 360 SAGLSKIGII VFSPAKKPFS FGHPSVESLL DRYLSRNNIS LAQTQQPQGN SAAGCELNMQ 420 LTQILSEVED EKKKGQAMEE IRKASVRRSV INWWEKPVEE MNMFQLQEMK HALEELRKTV 480 VTNMASFSEV KEDVFGFLDN KVTAPPYMNM SAGLSSIYNF ANGNGCF*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MMMSKKKETI GRQKIPMVKI KKESHRQVTF SKRRAGLFKK ASELCTLCGA EIGIIVFSPA  60
KKPFSFGHPS VESLLDRYLS RNNISLAQTQ QPQGNSAAGC ELNMQLTQIL SEVEDEKKKG  120
QAMEEIRKAS VRRSVINWWE KPVEEMNMFQ LQEMKHALEE LRKTVVTNMA SFSEVKEDVF  180
GFLDNKVTAP PQVTFSKRRA GLFKKASELC TLCGAEIGII VFSPAKKPFS FGHPSVESLL  240
DRYLSRNNIS LAQTQQPQGN SAAGCELNMQ LTQILSEVED EKKKGQAMEE IRKASVRRSV  300
INWWEKPVEE MNMFQLQEMK HALEELRKTV VTNMASFSEV KEDVFGFLDN KVTAPPYMNM  360
SAGLSKIGII VFSPAKKPFS FGHPSVESLL DRYLSRNNIS LAQTQQPQGN SAAGCELNMQ  420
LTQILSEVED EKKKGQAMEE IRKASVRRSV INWWEKPVEE MNMFQLQEMK HALEELRKTV  480
VTNMASFSEV KEDVFGFLDN KVTAPPYMNM SAGLSSIYNF ANGNGCF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g054930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006585	0.0	AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ056542	0.0	DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds.
GenBank	EU836691	0.0	EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417244.2	1e-135	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_010417245.2	1e-135	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_010419323.2	1e-135	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-116	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	D7LJG1	1e-120	D7LJG1_ARALL; Predicted protein
STRING	XP_010419323.1	1e-133	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-118	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]