PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g053360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 365aa MW: 40045.4 Da PI: 10.1573

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g053360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.7	1.8e-31	288	345	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d +++++tYeg+Hnh+ Csa07g053360.1 288 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 345 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.0E-16	237	284	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.0E-33	275	345	IPR003657	WRKY domain
PROSITE profile	PS50811	30.607	281	347	IPR003657	WRKY domain
SuperFamily	SSF118290	1.1E-26	284	346	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	286	346	IPR003657	WRKY domain
Pfam	PF03106	4.9E-27	288	344	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
VTYHTKDITS LSVHLNTNQL LLYYLVLSNP KKVHTTLSLL FFFCFLLRER DRDFMAVELM 60 TRNYISGVGA DSFAVQEAAA SGLKSMENFI GLMSRDNLNS DQPSSSSAAS ASATADLESA 120 RNTTADAAVS KFKRVISLLD RTRTGHARFR RAPVQVMNQE EPKTTPFHSP SLPPPPPQMM 180 MRKGSFTSSI KTIDFSSLSS VTMESDHNHR PSETAPFRSQ TQSLSTTVSS FSKPNSKRKC 240 NSENLLAGKC ASASSSGRCH CSKKRKIKQR RVIRVPAISA KMSDVPPDDY SWRKYGQKPI 300 KGSPHPRGYY KCSSVRGCPA RKHVERAADD SSMLIVTYEG DHNHSLSAAD LAGAAVADLI 360 LESS*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

VTYHTKDITS LSVHLNTNQL LLYYLVLSNP KKVHTTLSLL FFFCFLLRER DRDFMAVELM  60
TRNYISGVGA DSFAVQEAAA SGLKSMENFI GLMSRDNLNS DQPSSSSAAS ASATADLESA  120
RNTTADAAVS KFKRVISLLD RTRTGHARFR RAPVQVMNQE EPKTTPFHSP SLPPPPPQMM  180
MRKGSFTSSI KTIDFSSLSS VTMESDHNHR PSETAPFRSQ TQSLSTTVSS FSKPNSKRKC  240
NSENLLAGKC ASASSSGRCH CSKKRKIKQR RVIRVPAISA KMSDVPPDDY SWRKYGQKPI  300
KGSPHPRGYY KCSSVRGCPA RKHVERAADD SSMLIVTYEG DHNHSLSAAD LAGAAVADLI  360
LESS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	274	346	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g053360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF224704	1e-158	AF224704.1 Arabidopsis thaliana WRKY DNA-binding protein 15 (WRKY15) mRNA, complete cds.
GenBank	AF370194	1e-158	AF370194.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.
GenBank	AY062950	1e-158	AY062950.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417085.1	0.0	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	1e-180	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	R0HTZ8	0.0	R0HTZ8_9BRAS; Uncharacterized protein
STRING	XP_010417085.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	1e-153	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]