PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g052860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 404aa MW: 45655.4 Da PI: 8.9217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g052860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	215	261	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+++ L llP + kK +Ka++Le A++++k+Lq Csa07g052860.1 215 EHVLAERKRRQKLNERLIALSALLPGL-----KKTDKATVLEDAIKHLKQLQ 261 5889*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.745	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	212	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-10	215	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-15	215	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.60E-12	216	265	No hit	No description
SMART	SM00353	2.8E-14	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
TIKSSLVHIN ITKQNHIYSK TKEDLGKICT ILRVKLSPKA CFLFCFLFIF IFQYFLLSCF 60 GKKKIKEKKE TFLSFHEEME DSSFMDLMID TDEYLIDDWE SDFPIWGETN TKPCSESGSG 120 TETGFELVPE RPAKQMKTTN NNINTISSSP SSSSSSSGSR TSQVISFGSP HTNKTNPVET 180 SLNFSNKVST DQRMRSERKD CVNNGGRREP HLLKEHVLAE RKRRQKLNER LIALSALLPG 240 LKKTDKATVL EDAIKHLKQL QERVKKLEEE RVGTKKMDQL VILVKRSQVY LDDDSSSYSS 300 TCSAASPLSS SSDEVSILKQ TMPMIEARVS DRDLLIRVHC DNNKGCLIKI LSSLEKFRLD 360 VINSFTLPFG QSTLIITVLT KMDSKFSRPV EEVVKNIRLA LAE*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

TIKSSLVHIN ITKQNHIYSK TKEDLGKICT ILRVKLSPKA CFLFCFLFIF IFQYFLLSCF  60
GKKKIKEKKE TFLSFHEEME DSSFMDLMID TDEYLIDDWE SDFPIWGETN TKPCSESGSG  120
TETGFELVPE RPAKQMKTTN NNINTISSSP SSSSSSSGSR TSQVISFGSP HTNKTNPVET  180
SLNFSNKVST DQRMRSERKD CVNNGGRREP HLLKEHVLAE RKRRQKLNER LIALSALLPG  240
LKKTDKATVL EDAIKHLKQL QERVKKLEEE RVGTKKMDQL VILVKRSQVY LDDDSSSYSS  300
TCSAASPLSS SSDEVSILKQ TMPMIEARVS DRDLLIRVHC DNNKGCLIKI LSSLEKFRLD  360
VINSFTLPFG QSTLIITVLT KMDSKFSRPV EEVVKNIRLA LAE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	224	ERKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269\|PubMed:12581307, ECO:0000269\|PubMed:15155889, ECO:0000269\|PubMed:15919674, ECO:0000269\|PubMed:18248598, ECO:0000269\|PubMed:18467340, ECO:0000269\|PubMed:18780803}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g052860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488564	0.0	AF488564.1 Arabidopsis thaliana clone bHLH020 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417034.1	0.0	PREDICTED: transcription factor NAI1-like
Swissprot	Q8S3F1	1e-171	BH020_ARATH; Transcription factor NAI1
TrEMBL	R0FWX6	1e-179	R0FWX6_9BRAS; Uncharacterized protein
STRING	XP_010417034.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13607	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	1e-159	bHLH family protein

Publications ? help Back to Top
Hakenjos JP, et al. ML3 is a NEDD8- and ubiquitin-modified protein. Plant Physiol., 2013. 163(1): p. 135-49 [PMID:23903439] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition. Plant Signal Behav, 2015. 10(12): p. e1105418 [PMID:26479492]