PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g051580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SRS | ||||||||
Protein Properties | Length: 201aa MW: 23048.1 Da PI: 9.4163 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 197.1 | 5.5e-61 | 6 | 150 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++qq++++ + + +++++ kr rel+ s+ ss++ + + Csa07g051580.1 6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQQHQHQRQPQP-LFTTSSNIKRLRELQRLPDSSPSSSS---GV-QIR 95 569********************************************999988876555.45677888899988555555555443...44.445 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +++P+e++ +a frcv+vss+ dg+e++aYqt+v+igGh+f+GiL+dqG+++ Csa07g051580.1 96 TTPEHFPAELNFPADFRCVKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGPDK 150 55677************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.8E-57 | 6 | 149 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.3E-28 | 9 | 50 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-27 | 100 | 148 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQQHQHQR 60 QPQPLFTTSS NIKRLRELQR LPDSSPSSSS GVQIRTTPEH FPAELNFPAD FRCVKVSSIH 120 DGKEQYAYQT TVNIGGHIFR GILHDQGPDK VMVDHHNNRN CNNRQETLLP PSTSSCPLMI 180 TSHFTDFMSG SNQYSSVLRR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g051580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006841 | 7e-83 | AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence. | |||
GenBank | AY163777 | 7e-83 | AY163777.1 Arabidopsis thaliana hypothetical protein (F3K23.16) mRNA, partial cds. | |||
GenBank | CP002685 | 7e-83 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416889.1 | 1e-151 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SJT8 | 4e-95 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1P8AZ09 | 5e-99 | A0A1P8AZ09_ARATH; SHI-related sequence3 | ||||
TrEMBL | A0A1P8AZ68 | 6e-99 | A0A1P8AZ68_ARATH; SHI-related sequence3 | ||||
STRING | XP_010416889.1 | 1e-150 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 5e-92 | SHI-related sequence3 |