PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g050520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 581aa MW: 63220.6 Da PI: 5.6421 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++s Csa07g050520.1 125 FAKILTPSDANNGGGFSVPRYCADSVfplldfaADPPVQ--KLFITDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFM--RKS 215 89*********************999*****97555555..7************************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++++v+r+ Csa07g050520.1 216 HDEMFIGVRRA 226 88889***997 PP | |||||||
2 | Auxin_resp | 86.8 | 4.4e-29 | 284 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ +Fevv++P a++s+Fvv++e+ve+++++ ++ G+R+kma+etedss++++ +G+v+++ + ++ W++S+W++L+ Csa07g050520.1 284 AMNRAAKGLPFEVVFYPTAGWSDFVVRAEDVESSMSMYWTSGTRVKMAMETEDSSRITWfQGIVSSTYQ-ETGPWRGSPWKQLQ 366 67899******************************************************9999999999.888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-28 | 117 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-33 | 117 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-19 | 125 | 221 | No hit | No description |
Pfam | PF02362 | 5.0E-21 | 125 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 125 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.8E-24 | 284 | 366 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MSPPSDSAAG DILHRGVDPM IWRACAGASV QIPLLYSRVY YFPQGHVEHC CPSSPLVSTP 60 PPSTSPVPCL ISSIQLLADP ITDEVFAHLL LQPVSQDQFV PTTNFSRFAG YEGDVVDNNN 120 KVTTFAKILT PSDANNGGGF SVPRYCADSV FPLLDFAADP PVQKLFITDI HGAVWDFRHI 180 YRGTPRRHLL TTGWSKFVNG KKLIAGDSVV FMRKSHDEMF IGVRRAPISS SGGGTSYYGG 240 DEYNGYYSQS NGFVPPPKED DGCAKKTFRR SGLGKLTAEA VSEAMNRAAK GLPFEVVFYP 300 TAGWSDFVVR AEDVESSMSM YWTSGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS 360 PWKQLQITWD EPEILQNVKR VNPWQVEMVA NATQLHASFP PAKRLKYPHT GGFLSGDDGE 420 IHYPPQRGLS SAAAPDSSPY MFPYTTFPAG MQGARQYEFG SYNPTGFIGE NPPQLSTNNF 480 FSALPGLEKV STEKNFGSQP SDNLSPNSNT TNQSSGNDLV GNRGPTEAKA NSIKLFGKTI 540 TVQEPSESGP AESGLCEEDG SKESSDNTTQ LSLTPGPKNP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-63 | 17 | 387 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g050520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416742.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | R0HYF1 | 0.0 | R0HYF1_9BRAS; Auxin response factor (Fragment) | ||||
STRING | XP_010416742.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |