PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g047020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 344aa MW: 38289.7 Da PI: 7.0372 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 227.8 | 2e-70 | 116 | 282 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re + sa Csa07g047020.1 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnddkdhSGGGVSA 210 7899***********************************************************99977777777777777777666556677899 PP DUF702 86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 l +t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Csa07g047020.1 211 LVTTRVVNANSNSGLEMSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 282 9************9998776*******************98535567***********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.9E-64 | 119 | 281 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.0E-28 | 121 | 163 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.5E-26 | 230 | 280 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MAGFFYLGGR DNNNNNNNNN KQDHHQVDKD HHHQDKSNYL YLYKDEIYNN NKGFEIWPPQ 60 YFQQQEQQQH ASAPPNFYSF GMVPSGSSSN NNNNRSRSLY FNVVSDHESG GFTVTRQGGM 120 NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSTSS 180 RETQNTKRLR EASGGDNNDD KDHSGGGVSA LVTTRVVNAN SNSGLEMSQH LPPEVNSPAV 240 FRCVRVSSIE EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHLNL LASTATTTNV 300 EETATKAVAG NNNNGLMLDP SSLYPAQLNS FIAGTPFFTP PRS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g047020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY800620 | 0.0 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. | |||
GenBank | AY924730 | 0.0 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416444.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9LQZ5 | 0.0 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A178W9B5 | 0.0 | A0A178W9B5_ARATH; SRS5 | ||||
STRING | XP_010416444.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2645 | 25 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-178 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|