PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g038960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 439aa    MW: 46470.2 Da    PI: 6.969
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g038960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.2e-39561662101
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa07g038960.1  56 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 147
                     5789************************************************************999998885333333333333321...0222 PP

             TCP  89 ................kaaksaakskksq 101
                                     +          ++
  Csa07g038960.1 148 assplssfhttgmslyE----------DS 166
                     34455433333333331..........22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.03162116IPR017887Transcription factor TCP subgroup
PfamPF036345.9E-3662188IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MELHTNQNSG VSDSTLQLNS GDKHSIPFVG AMSTTTSSTS NSTSTSSGTA LAVVKPAAKK  60
PSKDRHTKVD GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIASTGTG  120
TIPANFSTLN ASLRGGGSTL FAQPSKSASS PLSSFHTTGM SLYEDSNGTN NGSSSVDPSR  180
KLLNSAAAAQ NAAAVFGFHH QMYPPIMSTE RAPSNLVKSY REDYFKEPSG SGAEPSGSSQ  240
KQGQFQDQEL GQGGRAAATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQPG  300
HQMWAFNPGN YPAGSGRVVT APMGSMMLGG QQLGLGVAES NMAAAMRGGS RGDGLAMTLD  360
QHQHQHQHQE PNQTQASENG GDDKKSFYDS YGSKAEFENS EAEINSVMRD SNQMPISFVE  420
RQLQRKEPKT NAESCEEP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g038960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415922.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGXP_010415922.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-166TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]