PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g038040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 165aa    MW: 17902.1 Da    PI: 10.1667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g038040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-2181136155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+WvAeIr+ + +g +r  r +lg+f taeeAa a+++a+ +l g
  Csa07g038040.1  81 KKYRGVRQRP-WGKWVAEIRCGRGGGgRRgDRLWLGTFNTAEEAALAYDNAAIQLIG 136
                     59********.**********777556555**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.8E-312161IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.92E-2281143No hitNo description
SuperFamilySSF541712.75E-2082144IPR016177DNA-binding domain
PROSITE profilePS5103221.60182144IPR001471AP2/ERF domain
PfamPF008471.9E-1582136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2882143IPR001471AP2/ERF domain
SMARTSM003808.1E-3282150IPR001471AP2/ERF domain
PRINTSPR003671.4E-118394IPR001471AP2/ERF domain
PRINTSPR003671.4E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEIIISFTDA EATDSSSDEE ETENRVGGGS QTTRRRGKRL VKEIVIDSPD SADDKLAVRK  60
TRFKIRIPAE FLAAAKTKER KKYRGVRQRP WGKWVAEIRC GRGGGGRRGD RLWLGTFNTA  120
EEAALAYDNA AIQLIGPHAP TNFGFPAENQ VVVGGGVSDV ARGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17791571181Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g038040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415808.11e-113PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9951e-77ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A178WNZ83e-75A0A178WNZ8_ARATH; CRF8
STRINGXP_010415808.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]