PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g034410.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 508aa MW: 54628.1 Da PI: 5.9635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g034410.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	333	381	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa07g034410.1 333 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 381 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.98E-11	328	385	No hit	No description
SuperFamily	SSF47459	2.75E-17	328	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-17	331	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-6	333	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	336	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDVSEEKRNR DSSNYDDRVD NPTVDWQVSG SNPVSAPIDS YSQENLISAC PSSCSPSQMM 60 DSFGQTLWYD PTSVQQAVGY GGGFSVQSNG GNASSSSSSF RGNIDRSLEM GWNLPNLLPP 120 KGNNGLFLPN VSSFLPPSMA QFPADSGFIE RAARFSLFSG GNFSDMVNQP LGNPESIGLF 180 LQGGGTTMQG HCQSNELNVV GGEPHNDEST VVKEPNVRSS EQSKLNVPGS GNVSEDTQSS 240 GGNGQKGGET SSKGFDTRKR KRNGQNSEAA QSHRSQQSEE EPDNNGDKKR NKEQSPNSPG 300 NKTNSGKQQG KQSSDPPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC 360 NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSST 420 TPFPPNMSMA YPPLPHGFMQ QTLSSIGRTI SSPLSPINGG FKRQETTGWE GDLQNVIHIN 480 YGAGDVTPDP QAAATASLPA ANMKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDVSEEKRNR DSSNYDDRVD NPTVDWQVSG SNPVSAPIDS YSQENLISAC PSSCSPSQMM  60
DSFGQTLWYD PTSVQQAVGY GGGFSVQSNG GNASSSSSSF RGNIDRSLEM GWNLPNLLPP  120
KGNNGLFLPN VSSFLPPSMA QFPADSGFIE RAARFSLFSG GNFSDMVNQP LGNPESIGLF  180
LQGGGTTMQG HCQSNELNVV GGEPHNDEST VVKEPNVRSS EQSKLNVPGS GNVSEDTQSS  240
GGNGQKGGET SSKGFDTRKR KRNGQNSEAA QSHRSQQSEE EPDNNGDKKR NKEQSPNSPG  300
NKTNSGKQQG KQSSDPPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC  360
NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSST  420
TPFPPNMSMA YPPLPHGFMQ QTLSSIGRTI SSPLSPINGG FKRQETTGWE GDLQNVIHIN  480
YGAGDVTPDP QAAATASLPA ANMKVEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g034410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415501.1	0.0	PREDICTED: transcription factor bHLH49-like
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	0.0	R0GH97_9BRAS; Uncharacterized protein
STRING	XP_010415500.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]