PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 265aa    MW: 30450.6 Da    PI: 4.7475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-05139159626
                     HHHHHHHHHHHHHHHHHHHCT CS
             HLH   6 nerErrRRdriNsafeeLrel 26 
                     n  E+rRR +iN ++ +L+el
  Csa07g033870.1 139 NLTEKRRRTDINAKIKTLKEL 159
                     899****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.61E-5128184No hitNo description
SuperFamilySSF474594.71E-7132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.94133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNINYYDQDS NEFWSLFSQS FAVPDPRDEF YPGIISPKPA MPISMAVDVP AELWKVLEDG  60
DKDVGLWNNA AAEVDAIKND ELLQAIIAWK PMEEGKEKEK GKEKEKEKGK GKEKEKEDVS  120
VEETMTLSKR RRGNTEGRNL TEKRRRTDIN AKIKTLKELT RCTEKKDLVT SLDCIISKIT  180
ELKQYVEGFY YPPPMMPPMD MGMDYRPGPW MYPYNYVHPQ YMMPYNYNPY IYGQTSGYGN  240
EMVPAAAVPT YQGVNYEPET ANPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129145RRRGNTEGRNLTEKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415444.21e-140PREDICTED: uncharacterized protein LOC104701444
STRINGXP_010415444.12e-63(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-07bHLH family protein