PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g033470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26496.3 Da    PI: 10.4922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g033470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-1817571050
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    + + + R+++++KKA ELSvLC++e +vi ++ +g+l++y+
  Csa07g033470.1 17 SSSTILRQATLFKKARELSVLCAIELCVICYGADGTLKTYP 57
                    444567**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0024159IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-142292IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2882360IPR002100Transcription factor, MADS-box
PfamPF003199.4E-112356IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKTMKTRKPN SANSSSSSST ILRQATLFKK ARELSVLCAI ELCVICYGAD GTLKTYPEER  60
EKVEAIALRY AALSKTKRRK KSVDLNEFLA KSNKKKLVRP RRVSKFPVWD PRFDNYSGEQ  120
VTGVVQSLER NVTRLQDRFR ALVEVQEQRK MNQGASSSST RNTINQYLLP QQPNNQFSMF  180
LLNHENGNVS QIPLGLMNQG QSLPMIPPVL LGNDNSGSLE AFGHPLYDLS QPLFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g033470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419060.11e-174PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-70AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8552e-70R0I855_9BRAS; Uncharacterized protein
STRINGXP_010419060.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-64AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]