PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g016050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 400aa MW: 43999.9 Da PI: 5.0175 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.2e-42 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la Csa07g016050.1 57 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLA 151 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e Csa07g016050.1 152 KTQVE 156 99865 PP | |||||||
2 | DUF260 | 135.4 | 2.2e-42 | 218 | 317 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la Csa07g016050.1 218 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLA 312 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e Csa07g016050.1 313 KTQVE 317 99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.323 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-42 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 26.323 | 217 | 318 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-42 | 218 | 315 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MLKMEINGGV ATPTASAVAV AAVAETTTPV SSPSPTSSPP PPPSPQQPPQ PPVVLSPCAA 60 CKILRRRCAE KCVLAPYFPP TDPAKFTIAH RVFGASNIIK FLQELPESQR TDAVNSMVYE 120 AGARMRDPVY GCAGAIYHLQ RQVSELQAQL AKTQVELVGM QLQRSSLLEL IYKMEQTKLS 180 AQEQGQHNMS FESSFESGDE FISSPDEQPP QPPVVLSPCA ACKILRRRCA EKCVLAPYFP 240 PTDPAKFTIA HRVFGASNII KFLQELPESQ RTDAVNSMVY EAGARMRDPV YGCAGAIYHL 300 QRQVSELQAQ LAKTQVELVG MQLQRSSLLE LIYKMEQTKL SAQEQGQHNM SFESSFESGD 360 EFISSPDEES NDLGFLEDNN NNNIVNNNSS MSWWDPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 49 | 319 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 49 | 319 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g016050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510616.1 | 1e-125 | PREDICTED: LOB domain-containing protein 11-like | ||||
Swissprot | Q9SK08 | 1e-122 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2H5NZ65 | 1e-134 | A0A2H5NZ65_CITUN; Uncharacterized protein | ||||
STRING | XP_010510616.1 | 1e-124 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-110 | LOB domain-containing protein 11 |