PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g011670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 445aa MW: 50383.4 Da PI: 5.6858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g011670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	235	282	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +++ Er RR + N++f+ L++l+P++ +K + a+i+ +A++YIk+L Csa07g011670.1 235 KSNNSPTERERRVHFNDRFQDLKSLIPNP-----TKSDRASIVGEAIDYIKEL 282 5667778********************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.42E-14	230	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-13	230	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-11	231	287	No hit	No description
PROSITE profile	PS50888	15.593	233	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	235	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-10	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MEEEKGNLYE EMGCFDPNTP AEVTVETSFS QAEQPPQILV AGSTSNSNCS VEVEELSEFH 60 LSPQDCPQAA STPLQFHINP PPPPCDQFHN NMIHHMATHH HQQSDWDQHN GYQDFVNMVP 120 NSATTPDLLS LLPLPRCSLP PPPLHHHPSS VLPNSFSDIM SSSSAAAVMY DPLFHLNFPM 180 QPRDQIQMDA NGGVNMMYFE GGHNNNDNNG DGFDNGVLEF NTTGVVTRKR RRSQKSNNSP 240 TERERRVHFN DRFQDLKSLI PNPTKSDRAS IVGEAIDYIK ELLRTIEEFK MLVEKKRFGR 300 FRSKKKARRG EDQQQEEEDT VNYKPQSEVD QSCFSKNNNN SLRCSWLKRK SKVTEVDVRI 360 IDDEVTIKLV QKKKINCLLF TTKVLDQLQL DLHHVAGGQI GEYYSFLFNT KICEGSCLYA 420 SGIADTVMEV VEKQYMEAVP SNGY*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MEEEKGNLYE EMGCFDPNTP AEVTVETSFS QAEQPPQILV AGSTSNSNCS VEVEELSEFH  60
LSPQDCPQAA STPLQFHINP PPPPCDQFHN NMIHHMATHH HQQSDWDQHN GYQDFVNMVP  120
NSATTPDLLS LLPLPRCSLP PPPLHHHPSS VLPNSFSDIM SSSSAAAVMY DPLFHLNFPM  180
QPRDQIQMDA NGGVNMMYFE GGHNNNDNNG DGFDNGVLEF NTTGVVTRKR RRSQKSNNSP  240
TERERRVHFN DRFQDLKSLI PNPTKSDRAS IVGEAIDYIK ELLRTIEEFK MLVEKKRFGR  300
FRSKKKARRG EDQQQEEEDT VNYKPQSEVD QSCFSKNNNN SLRCSWLKRK SKVTEVDVRI  360
IDDEVTIKLV QKKKINCLLF TTKVLDQLQL DLHHVAGGQI GEYYSFLFNT KICEGSCLYA  420
SGIADTVMEV VEKQYMEAVP SNGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	231	RKRRR
2	227	232	RKRRRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g011670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	0.0	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	0.0	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	0.0	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	0.0	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414163.1	0.0	PREDICTED: transcription factor bHLH10-like
Refseq	XP_010414164.1	0.0	PREDICTED: transcription factor bHLH10-like
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	R0HNY7	0.0	R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010414163.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]