PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa07g008630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 50215.3 Da PI: 6.8534 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 4.1e-11 | 45 | 70 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff+rtG+C yG++C+++H+ Csa07g008630.1 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70 5789*********************9 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG++Ck++H++ Csa07g008630.1 91 QPDCEYFLKTGACKYGPTCKYHHPK 115 789********************96 PP | |||||||
3 | zf-CCCH | 32.7 | 1.3e-10 | 136 | 159 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG C++G CkF+H+ Csa07g008630.1 136 EKSCPYYMQTGLCRFGVACKFHHP 159 667********************8 PP | |||||||
4 | zf-CCCH | 39.9 | 6.8e-13 | 266 | 290 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Crff+ tGtCkyGd Ck++H++ Csa07g008630.1 266 RAECRFFMNTGTCKYGDDCKYSHPK 290 799********************96 PP | |||||||
5 | zf-CCCH | 33.7 | 6.1e-11 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f ++G+Ck+G++CkF H++ Csa07g008630.1 310 PGEPACGNFKAYGFCKFGASCKFDHPM 336 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 50 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-7 | 263 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.164 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-8 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 266 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-7 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 306 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-8 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MSETQQQVQN STGSIRSPEK IEDTFRRVKV DEDNMEQSSP YPDRPGERDC QFFLRTGQCG 60 YGNTCRYNHP LTHLPQGVIY YKDQLPERIG QPDCEYFLKT GACKYGPTCK YHHPKDRNGA 120 GPVLFNVLGF PMRQGEKSCP YYMQTGLCRF GVACKFHHPH PQAPNGHSAY AMSSFPPSVG 180 FPYASGMTMM SLPPATYGAM PRPQVPQSQA YMPFMVAPSQ GLIPPQGWAT YMAASNPIYN 240 VKTQPDSSSS VSVPVAVTSH QHISERAECR FFMNTGTCKY GDDCKYSHPK ERLLQSPPNL 300 LNPIVLPVRP GEPACGNFKA YGFCKFGASC KFDHPMPLNP YNNTGMAMSP LPTPYAYAPP 360 VSAHLRISSP PIPSDSTTLP NGKPTPESQS SETEKQDDDI PTEPEKTEVH NSLPTSTLPN 420 GKPDVENPSS ETEKQEENVA QPDSSKVQDP SDKST* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa07g008630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF138744 | 0.0 | AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413928.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 26 | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | D7LFN3 | 0.0 | D7LFN3_ARALL; Uncharacterized protein | ||||
STRING | XP_010413928.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32930.1 | 0.0 | zinc finger nuclease 2 |