PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g004660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 322aa    MW: 35347.6 Da    PI: 8.3796
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g004660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18167221256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Csa07g004660.1 167 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 221
                     788899***********************************************98 PP
2HD-ZIP_I/II122.81.7e-39167256191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Csa07g004660.1 167 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 256
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.9E-351123IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.99E-19148224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-19150221IPR009057Homeodomain-like
PROSITE profilePS5007117.313163223IPR001356Homeobox domain
SMARTSM003892.6E-15165227IPR001356Homeobox domain
CDDcd000867.44E-16167224No hitNo description
PfamPF000464.2E-16167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003401.6E-26223266IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-11223257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGYNQ KEPSSRSNPM PLASSYSSSP HMHMHMQQQQ SNNYSHPQKI  60
QNSWINMFQS SERNSDMRSF LRGIDVNRAP STVVVDVEDD AAGVSSPNSA VSSVMSGKRS  120
ERELIAAAAA AGGGSRVDDN EMERASCSLG GGSDDEDGSG NGDDGSRKKL RLSKEQALVL  180
EETFKEHSTL NPKQKMALAK QLNLRTRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT  240
EENRRLQKEV SELRALKLSP HLYMHMKPPT TLTMCPSCER VAVTSSPSSV APPVMTSSSP  300
MGPMSPWAAI PHRQRPAAGS H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171SRKKLRL
2215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g004660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankATU093380.0U09338.1 Arabidopsis thaliana clone HAT3 homeobox protein mRNA, complete cds.
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082908.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082909.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082910.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_019082911.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466020.0HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP70.0D7LRP7_ARALL; Uncharacterized protein
STRINGXP_010413565.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-120homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]