PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07482s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 82aa    MW: 8964.91 Da    PI: 10.2314
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07482s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.28.2e-16126871128
             NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     g++k+r  + gyW+at   k++ + ++  vg k++L +y g++p+g+k dW+m+ey l
  Csa07482s010.1  12 GRQKKRGSNGGYWSATVAAKKINA-GNGIVGYKTILDYYVGKQPNGVKGDWLMQEYWL 68 
                     677888999**************9.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.758182IPR003441NAC domain
SuperFamilySSF1019413.4E-181075IPR003441NAC domain
PfamPF023652.1E-61567IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
RTKLGKGGGR GGRQKKRGSN GGYWSATVAA KKINAGNGIV GYKTILDYYV GKQPNGVKGD  60
WLMQEYWLES SSSDDDHNNE NK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07482s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431409.11e-52PREDICTED: NAC transcription factor 29-like
RefseqXP_010497634.16e-53PREDICTED: NAC transcription factor 29-like, partial
TrEMBLD7LVH11e-30D7LVH1_ARALL; Uncharacterized protein
STRINGXP_010427482.13e-52(Camelina sativa)
STRINGXP_010497634.12e-52(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.12e-24NAC domain containing protein 64