PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g053320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 365aa    MW: 41948.1 Da    PI: 6.9183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g053320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13178228154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h ++Er+RR+++N  ++ Lr+l+P++   + ++ + a+i+  A++++k L
  Csa06g053320.1 178 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YIQRGDQASIVGGAIDFVKIL 228
                     79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15169240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-10176233No hitNo description
PROSITE profilePS5088814.843177228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MERSIQGQNH CSLDQKVNVR RSLQVQGSVE DHQGFAFGEE QLSTPSLLQD TTIPFLQMLQ  60
QSEEPSSFLS IKEPNFLALL SLQTLEKPNW ELESYLPHEV PEFHSPIHSE TYNHYYQNSY  120
FEGFSEAISG QKLPFNPLQN TNPRRKRKNN NLVTPMTRER RKRRRTKPTK NIEEMESQRM  180
THIAVERNRR RQMNVHLNSL RSLIPSSYIQ RGDQASIVGG AIDFVKILEQ HLQALEAQKT  240
TQQSTDSKEQ IPEEDNNNNS LRDISSNKLR ASKEEEEEET SRLTKIDATV IESHVNLKIQ  300
CTRKQGQLLR SIILLEKLGF TVLHLNITSP TNTSVSYSFN LKMEDDCNLG SADEIKAAIR  360
QIFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145164KRKNNNLVTPMTRERRKRRR
2160164RKRRR
3160165RKRRRT
4160167RKRRRTKP
5178189RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g053320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518358.10.0PREDICTED: transcription factor bHLH70-like isoform X1
SwissprotO810370.0BH070_ARATH; Transcription factor bHLH70
TrEMBLR0HQY40.0R0HQY4_9BRAS; Uncharacterized protein
STRINGXP_010518359.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]