PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g053020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 578aa    MW: 64326 Da    PI: 5.6998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g053020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14405451455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YIk+Lq
  Csa06g053020.1 405 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 451
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5148239IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-19400464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.936401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-15404454No hitNo description
Gene3DG3DSA:4.10.280.101.3E-18405462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSMSDLGWDD EEKSMVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDSLNK KLSSLVDWPN  60
SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES KALRSYHFNY MGLDEETWQD  120
MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLSSMY FFFNHGEGGP GRCYASGKHV  180
WLSGAVNSES DYCFRSFMAK SSGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM  240
RRVTQPLMVT SNTNNMSGGI HRLFGQDLNN SEHVAHAYPK KLDVRRNLDE RFTPQSWDGY  300
NNNNNGPTTF GGYTSQREDV KVQENVNLVL DNSNYKTQIE LAASSIAASS NPSTNTQLEI  360
SDSCTAKRPA SLLAASVAGT VSVVDEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR  420
FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVNIMEAE RVRTGSSLSE SMTTRTGESP  480
EVDIQAVNEE VVVRVISPLD SHPASRIIQA MRNSEVSVLE SKLSLAEDTM FHTFVVKSNN  540
LSDPLSKEKL IAAVYLPETS STQQPLPSSS SQVSGDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29399470273Transcription factor MYC2
5gnj_B3e-29399470273Transcription factor MYC2
5gnj_E3e-29399470273Transcription factor MYC2
5gnj_F3e-29399470273Transcription factor MYC2
5gnj_G3e-29399470273Transcription factor MYC2
5gnj_I3e-29399470273Transcription factor MYC2
5gnj_M3e-29399470273Transcription factor MYC2
5gnj_N3e-29399470273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386394KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g053020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064180.0AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBankAC0065260.0AC006526.8 Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518324.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLD7LEK30.0D7LEK3_ARALL; Basic helix-loop-helix family protein
STRINGXP_010518324.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]