PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g052160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 723aa    MW: 80749 Da    PI: 4.5226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g052160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.1e-18490578197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk +++  ++ s  + +p +f+e    +   + t +l+ + gr W+v +  +k ++++++t+GW++F+++++L +g+ ++F +dg+++f   v+
  Csa06g052160.1 490 FFKMFVS--HTDSESFAIPLSFIEFLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGVYFTAGWSKFAQDHELVDGEYLTFVYDGNRTF--EVS 576
                     6776733..3344448*******777655..889****************..*********************************98888..777 PP

                     EE CS
              B3  96 vf 97 
                     vf
  Csa06g052160.1 577 VF 578
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3434471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00134470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-54669IPR000571Zinc finger, CCCH-type
SMARTSM003201.0E-475114IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.6E-2277125IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.26E-2278126IPR017986WD40-repeat-containing domain
PfamPF004000.00279114IPR001680WD40 repeat
PROSITE profilePS5029411.47182123IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.17982123IPR001680WD40 repeat
PROSITE patternPS006780101115IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.102.6E-22169170IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.102.6E-22202316IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.26E-22209318IPR017986WD40-repeat-containing domain
PROSITE profilePS502949.837217268IPR017986WD40-repeat-containing domain
SMARTSM003200.16222259IPR001680WD40 repeat
PfamPF004000.1224258IPR001680WD40 repeat
SMARTSM00320190265306IPR001680WD40 repeat
CDDcd100178.51E-17488578No hitNo description
PROSITE profilePS5086313.521488581IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-21488580IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-20488579IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-15490578IPR003340B3 DNA binding domain
SMARTSM010192.1E-19490581IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MNSPVSGTGY LVSNQPRKNG LYGSRSSSIS GSRVWTPEDS GSPKSRETVW KYWKAGNCKK  60
GEQCEFLHSW CCFPGLVMVA TLEGHRKDIK GIAVPQGSDK LYSVSGDGAL RIWDCHTGQF  120
VHEINLQAEA GSLISEGPWV FLGLPNAVKA FNVQTCKDLY LGRRSGECNG CWKRNALCWD  180
ECKPFNSLHL YFFWKVTDTE SDPFKYLTSL EGHSGEVWDL DTLQCIMTLR QHSDTVTSLL  240
CWDQYLLPSS LDGTIKVWGS SESLNLKVIH TRSQEQSVHV LCGLHDAEAR PIIFCSYENG  300
TVGIYDLPSG VKQQDLMQDR LLDLSKINES DLKKSITYSH ISKVLMEKPT DFEPDFSSTS  360
VWRNQNLQTR VTISSIPTPE SLFLSFFFFS QIHGSLFKPQ MLSGEAWVRR GTKANPEYRN  420
LGDHAESVQF GRKAPKDIKS LAANYMQGKA GHLSLKAQRP TSTLSFSLAS YISMAEPEHD  480
DADDVLLPRF FKMFVSHTDS ESFAIPLSFI EFLADPLPNT AKLQGTGGRD WTVSMKKIRD  540
GVYFTAGWSK FAQDHELVDG EYLTFVYDGN RTFEVSVFGR FDCKETRAEA ETLELSGSSS  600
DSEEDEEPSL DVELSGSSSD SEEDEEPSMD VELSGSSSDS EEDEEPSMDV EYDISLGEDE  660
EISQSLYPFE DEATESDAAA VFEGNVDVKA LTNPHFTTTL KIRNNELTLE LVLPLLELSR  720
WA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-2148958310104At1g16640
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g052160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-129C3H family protein