PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28457.1 Da    PI: 9.6725
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.1e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  Csa06g048980.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 74
                    79***********************************************8 PP
2K-box106.62.8e-35961917100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk..kekelqeenkaLrkkle 99 
                      s++ea+++++qqe++kL+++i+ +q+ +Rh+lGe+L+sL++keL++Le++Lek+++++RskK+e+l+++ie++qk  ke elq++n++Lr+k+ 
  Csa06g048980.1  96 PSVTEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKrvKEIELQNDNMYLRSKIT 190
                     45899**********************************************************************94457789999******997 PP

           K-box 100 e 100
                     e
  Csa06g048980.1 191 E 191
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3891777IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-321889IPR002100Transcription factor, MADS-box
CDDcd002652.50E-431891No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-321939IPR002100Transcription factor, MADS-box
PfamPF003193.3E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-325475IPR002100Transcription factor, MADS-box
PfamPF014861.2E-24101189IPR002487Transcription factor, K-box
PROSITE profilePS5129714.927103195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEGGASSNDV AESSKKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVIFSTRGRL YEYANNSVRG TIERYKKACS DAVNPPSVTE ANTQYYQQEA SKLRRQIRDI  120
QNLNRHILGE SLGSLNFKEL KNLESRLEKG ISRVRSKKHE MLVAEIEYMQ KRVKEIELQN  180
DNMYLRSKIT ERAGLQQQES GAIHQGTVYE SGVTSSHHSE QYNRNYIPVN LLEPNQNSSN  240
HDQPPLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q4e-201785169Myocyte-specific enhancer factor 2B
1tqe_R4e-201785169Myocyte-specific enhancer factor 2B
1tqe_S4e-201785169Myocyte-specific enhancer factor 2B
5f28_A5e-201785169MEF2C
5f28_B5e-201785169MEF2C
5f28_C5e-201785169MEF2C
5f28_D5e-201785169MEF2C
6c9l_A4e-201785169Myocyte-specific enhancer factor 2B
6c9l_B4e-201785169Myocyte-specific enhancer factor 2B
6c9l_C4e-201785169Myocyte-specific enhancer factor 2B
6c9l_D4e-201785169Myocyte-specific enhancer factor 2B
6c9l_E4e-201785169Myocyte-specific enhancer factor 2B
6c9l_F4e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294530.0BT029453.1 Arabidopsis thaliana At2g42830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506124.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_010508520.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
RefseqXP_010517826.10.0PREDICTED: agamous-like MADS-box protein AGL5 isoform X1
SwissprotP293851e-171AGL5_ARATH; Agamous-like MADS-box protein AGL5
TrEMBLD7LJD31e-174D7LJD3_ARALL; Uncharacterized protein
STRINGXP_010506124.10.0(Camelina sativa)
STRINGXP_010508520.10.0(Camelina sativa)
STRINGXP_010517826.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.21e-164MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Rathnakumar K, et al.
    Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
    J. Thromb. Haemost., 2016. 14(8): p. 1655-67
    [PMID:27241812]
  4. Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
    Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
    Development, 2016. 143(18): p. 3372-81
    [PMID:27510967]
  5. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]