PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g047880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 944aa    MW: 103801 Da    PI: 6.6105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g047880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.2e-07238258526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  Csa06g047880.1 238 PCPDFRK-GACRRGDMCEYAHG 258
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.95E-839115IPR020683Ankyrin repeat-containing domain
CDDcd002048.59E-747114No hitNo description
Gene3DG3DSA:1.25.40.207.0E-954116IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.97357125IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008813.7585792IPR002110Ankyrin repeat
SMARTSM002487.3E-45789IPR002110Ankyrin repeat
PfamPF000238.7E-65891IPR002110Ankyrin repeat
PRINTSPR014158.0E-65873IPR002110Ankyrin repeat
PRINTSPR014158.0E-67690IPR002110Ankyrin repeat
SMARTSM003564.0E-6233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582238260IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4238258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4238260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4266296IPR000571Zinc finger, CCCH-type
SMARTSM0035667268291IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.20.1000.104.0E-4507548No hitNo description
Gene3DG3DSA:1.20.1000.102.2E-4776820No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MCCGSDRLNQ IVSSRSSSPV SLEDNNLVTN LVMNHLRVET EDTFASLLEL AANNDVEGTT  60
ALHCAASGGA VNAIQVVKLL LAAGADLNLL DAEGQRAGDV IVVPPKLEGV KLMLQELLSA  120
DGSSTAERNL RVVTNVPNRS SSPSHSPTGE NGGSGSVSPL GSPFKLKSTE FKKEYPVDPS  180
LPDIKNSIYA TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  240
DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC GRRVCFFAHT PEELRPLYAS  300
TGSAVPSPRS NADYAAALSL LPGSPSGVSV MSPLSPSSAG NGMSHSNMAW PQPNVPALHL  360
PGSNLQSSRL RSSLNARDIP TDEYNMLADY EQQQLLNEYS NSLSRSGRMK SMPPSNFEDL  420
FSAEGSSSPR FTDSALASAV FSPTHKSAVF NQFQQQQQQQ SMLSPINTSF SSPKSVDHSL  480
FSGGGRMSPR NVVEPISPMS SRVSMLAQCV KQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ  540
QQQQQQYRSL SSRELRANSS PIVGSPVNNN NNTWSSSKWG SSNGQPDWGM SSEALGKLRS  600
SSSFDGDEPD VSWVQSLVKE SPTDAKEKTA TSSSSGENSS RLRSSLNARD IPTDEYNMLA  660
DYEQQQLLNE YSNSLSRSGR MKSMPPSNFE DLFSAEGSSS PRFTDSALAS AVFSPTHKSA  720
VFNQFQQQQQ QQSMLSPINT SFSSPKSVDH SLFSGGGRMS PRNVVEPISP MSSRVSMLAQ  780
CVKQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQYR SLSSRELRAN SSPIVGSPVN  840
NNNNTWSSSK WGSSNGQPDW GMSSEALGKL RSSSSFDGDE PDVSWVQSLV KESPTDAKEK  900
TATSSSSGEN VKQPNQMEPV MDHAGLEAWI EQMQLDQLVA QQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g047880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372320.0AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankAY0939570.0AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankU904390.0U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517688.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A178VPY50.0A0A178VPY5_ARATH; OXS2
STRINGXP_010517688.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]