PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g047710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 26574.9 Da PI: 9.1757 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 174 | 196 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Csa06g047710.1 174 VCPQCGAKFSSVTSLVEHVEKtH 196 6*****************99888 PP | |||||||
2 | zf-C2H2 | 20.2 | 1.5e-06 | 212 | 234 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L++Hi + H Csa06g047710.1 212 VCPKCSRGFRDPVDLVNHIERdH 234 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 6.3E-8 | 40 | 96 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.47E-8 | 51 | 99 | No hit | No description |
PROSITE profile | PS51039 | 8.23 | 56 | 105 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.5E-8 | 59 | 98 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0068 | 59 | 100 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.01 | 173 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 173 | 201 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.12E-5 | 174 | 230 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 175 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-4 | 177 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.9 | 211 | 234 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 211 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 213 | 234 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKHTCPKGDR EDVTVVICPL CAKGVRLNPN EDPNITWEKH VNTDCDPSNY EKATKKKKCP 60 VPRCKEQLTF SNTIKCRDCN IDHCLKHRFG PDHSCPGPRK LPFMGFLSSS SSSSSRKEAK 120 TTRPNKASTS SSSSTSRWSN LLSSAEAGIS RLGNDISQKL QFSSSSSNDG IIEVCPQCGA 180 KFSSVTSLVE HVEKTHERNK KQNHGSKNTV DVCPKCSRGF RDPVDLVNHI ERDHRGTSKT 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g047710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517671.1 | 1e-175 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like | ||||
Swissprot | Q8VZ42 | 1e-145 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A178VRV3 | 1e-142 | A0A178VRV3_ARATH; Uncharacterized protein | ||||
STRING | XP_010517671.1 | 1e-174 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-139 | C2H2 family protein |