PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g045170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 290aa MW: 32332.3 Da PI: 6.7182 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.4 | 6.2e-28 | 161 | 221 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ itY+g+H+++ Csa06g045170.1 161 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRITYRGSHTCH 221 8****************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-27 | 152 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-25 | 156 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 160 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 161 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.967 | 161 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEEVMSMIFH GMKLVKLLES SLPDKPPESL STSLDEIAKT FDDANERLKM FLEIRNSETA 60 LNQTKPVVVS VSNQMLVQME PGLTMQEYWL RCGGSTSSQG AEAMFQTQLM AVDGGGGRNF 120 TEGSGASGSS TPRQRRRKDE GEEQTVLVAA LRTGNTDMPP DDNHTWRKYG QKEILGSRFP 180 RAYYRCTHQK LYNCPAKKQV QRLNDDPFTF RITYRGSHTC HIYSTAPTSS ATVTATTAMG 240 HYIDYGSPIR DVTDAMFGSS GIGANMDFIY PFNDLPHRFR RLDDGDGHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 161 | 220 | 9 | 68 | OsWRKY45 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g045170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493584 | 0.0 | AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740. | |||
GenBank | DQ056575 | 0.0 | DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517511.2 | 0.0 | PREDICTED: WRKY transcription factor 55-like | ||||
Swissprot | Q9SHB5 | 1e-169 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | D7LFT8 | 1e-176 | D7LFT8_ARALL; WRKY DNA-binding protein 55 | ||||
STRING | XP_010517511.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-165 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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