PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g044720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 343aa    MW: 38265 Da    PI: 4.6054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g044720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1773123256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr+p   gk  r +lg+f t  eAa a+++a+k+++g+
  Csa06g044720.1  73 EYRGVRQRT-WGKWVAEIREP---GKGGRLWLGTFSTSHEAALAYDEAAKAMYGH 123
                     69****999.**********9...4348************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-3072131No hitNo description
Gene3DG3DSA:3.30.730.101.5E-2973131IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2073131IPR016177DNA-binding domain
SMARTSM003802.6E-3473136IPR001471AP2/ERF domain
PfamPF008474.1E-1373123IPR001471AP2/ERF domain
PROSITE profilePS5103221.10173130IPR001471AP2/ERF domain
PRINTSPR003672.3E-97485IPR001471AP2/ERF domain
PRINTSPR003672.3E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPSMIVDRKR KSRGERERDV AEILRKWREY NQQTETDSCI DCGVPKPIRK APVKGSRKGC  60
MRGKGGPENG NCEYRGVRQR TWGKWVAEIR EPGKGGRLWL GTFSTSHEAA LAYDEAAKAM  120
YGHSARLNLP DFTTNGSSST AATVSGSVTA FSDESEVCAR YDTNVISGFG QVKLEGSSDE  180
YVTFDSSQCI EEKLNVKEEE REPNSVDAFG TGQESKKETL DDWLMGNGND QAPFRFDVDE  240
TFDISELLGI RDDNNASGQD TMQCQVNRKP NFSDQMQFQD ANLPESLNPM EIANPEVDYG  300
YHYTHQSEME NNGIGLYHRR FQDLDVQEDL DFGGGKDVHG AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1774130360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g044720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517453.10.0PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ8LFR21e-176DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLR0FXH60.0R0FXH6_9BRAS; Uncharacterized protein
STRINGXP_010517453.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-149ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]