PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g044440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 232aa    MW: 26859.5 Da    PI: 4.7371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g044440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-12115205283
                     EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
              B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                     +k+l+ sdv k  +rl lp+  +ee        ++++  + +++++ ++g  +++++k+  +++ ++ vlt+GWkeFv  +gL  + Df++  
  Csa06g044440.1 115 KKQLMLSDVDKDqSRLLLPRLLVEETmlpfleeSENPSLGLDVSVYGPDGevQQMKFKI--WNGVRTPVLTSGWKEFVAKHGLVmTSDFITVW 205
                     689999999998799********999*****9977888999*********555555555..**********************9899999854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.45E-15108212No hitNo description
SMARTSM010192.3E-7114219IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-14115217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-15115208IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-7116204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAFTQEEDED LHVAAWTLMH LHQAQAQYLN QSPEEDDIDD EVESTPLSQV SQAHQKPSRK  60
RKYADNNQNT MKINKEELFS EETLRLIQAW YRDDPDPLEI FQAGEVTRRF SKPLKKQLML  120
SDVDKDQSRL LLPRLLVEET MLPFLEESEN PSLGLDVSVY GPDGEVQQMK FKIWNGVRTP  180
VLTSGWKEFV AKHGLVMTSD FITVWMFRHI KTQKICFAID YVRFSLIDPV G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g044440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505731.11e-153PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR146e-82Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MQ426e-88D7MQ42_ARALL; Uncharacterized protein
STRINGXP_010505731.11e-153(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-84B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]