PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa06g041140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28736.9 Da PI: 5.6094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 66 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p++ +g ++kr +lg+f ta eAa a+++a+ +++g Csa06g041140.1 66 CRFRGVRQRV-WGKWVAEIREPVNhRGanstRSKRLWLGTFATAAEAALAYDRAASAMYG 124 689*****99.**********999977877666**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.65E-21 | 66 | 133 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 66 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-19 | 67 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.852 | 67 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-31 | 67 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-27 | 67 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MEKEESGSKQ RYSRRRRRAV EPVEATLQRW GKEEDGEGLE RVRRVQAKGS KKGCMRGKGG 60 PENPVCRFRG VRQRVWGKWV AEIREPVNHR GANSTRSKRL WLGTFATAAE AALAYDRAAS 120 AMYGRYARLN FPEGLLENGP GGEMKKSDGA GSSGSYWFEP DNVSEAPDGV LETKDEKDYL 180 LYDNGIELGQ DKIENLDLTD TKMVESMVYK NPAVKAEEGY SFDRFELDSG LLYNEPGGSS 240 YYQGGGSDSY LEFFSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 68 | 132 | 6 | 63 | ATERF1 |
3gcc_A | 5e-15 | 68 | 132 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa06g041140.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010517125.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2E-like | ||||
Swissprot | O80917 | 1e-103 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | R0FYX8 | 1e-150 | R0FYX8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010517125.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14249 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38340.1 | 2e-85 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|